Copyright 2021 Emeline Favreau, University College London.
We tested each species againt a dataset comprising gene expression data for the five other species, or a lineage specific dataset (e.g. only bees). The SVM model gives the list of predictor genes (genes whose expression predicts the phenotype of a given sample), after Recursive Feature Selection (ie iteratively removing the weakest gene in predicting phenotype, running from 3718 orthogroups to 100).
The larger line is the average for a given phenotype: Reproductive (R) or Non-Reproductive (NR).
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
The training dataset comprises of only two species (the other two bees).
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image
## `summarise()` has grouped output by 'phenotype'. You can override using the `.groups` argument.
## Saving 7 x 5 in image